The length of time varies with each computer... right now I'm working on a Ligand 3D structure. I'm at 92% and have been working on it for 6 hours and 9 minutes. (I have a Pentium 4, 1.8GHz) Don't get discouraged... remember every little bit helps the cause... but I hope you can process a result soon. I remember Lord Dexter and a few others had a problem with larger proteins. Perhaps someone else will give you a few tips. I'll continue watching for your first result though...
