Both files should automatically sense all the directories created under your $rootdir.
For gallery.pl, that means that they will automatically show up as categories to upload photos under, and for album.pl, they appear as "albums" with the appropriate photos inside.
I'm not sure if that answered your question or not...
If you give me the URL you're working with (PM if you don't want to make it public) I'll see if I can figure out what's going on...
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