The way that you are tracked by Threads is when you click on a link (to load a list of posts in a forum, for example). Because the chat page is static, and Who's Online updates every 10 minutes, people have a tendancy to "fall off" of who's online when they are in the chat.
JoshPet solved this problem by creating a java script that updates your online status every 9 minutes, but I don't use it in my hack.
The odd thing that I've noticed is that sometimes I'll show up on a different page in the who's online display, even though the only page I have open is the chat. Unfortunately I don't know enough about how the who's online script works and I haven't had time to sit down and figure it out.
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